Actin cortex mechanics and the morphogensis of animal cells
Lead Research Organisation:
University College London
Department Name: UNLISTED
Abstract
We investigate how animal cells control their shape. Many vital processes in our body rely on precise changes in cell shapes. For example, when a tissue is wounded, cells deform and migrate in order to close the wound. Another example is cell division, where the mother cell deforms and splits itself into two daughter cells. Cell division is central to embryonic development, where one initial cell multiplies and gives rise to an entire organism. Improper control of cell shape can lead to many diseases. A prominent example is cancer, where improper division lead to tumour formation and improper migration leads to metastasis. As for any other physical object, the shape of a cell is controlled by physics. The cell produces molecules, these molecules form larger structures, which determine the mechanical properties of a cell. It is these global mechanical properties that drive cell deformations. We combine biology and physics to understand how the cell controls its shape. We investigate the physical properties of cells, and relate them to the molecular processes that control them. This approach is powerful, because diseases, such as cancer, are caused by changes in the molecules but their effects, such as tumour formation, result from changes in global cell mechanics. It is thus essential to understand the physical control of processes like cell migration and division. Our long-term aim is to understand how a wrong control of cell physics leads to pathological conditions.
Technical Summary
The shape of animal cells is primarily determined by the cellular cortex, a cross-linked network of actin and myosin underlying the plasma membrane. The cortex enables the cell to resist and exert forces. As such, it plays a central role during events involving cell deformation, such as division and locomotion, and in the patho-physiology of diseases such as cancer, in which cortical mechanics are often misregulated. Despite its importance, very little is known about cortex composition, regulation, and mechanics. To address these questions, we combine cell and molecular biology experiments, quantitative imaging and theoretical modelling. This interdisciplinary approach allows us to investigate the basic mechanisms of morphogenesis across scales, from molecular players to emerging physical behaviours. The group follows three main research directions. We investigate cell shape control during cell division. Cell cleavage during cytokinesis relies on a controlled reorganisation of the cortex, which concentrates at the equator where it drives furrow ingression. We have recently shown that even though strong cortical forces are generated at the equator, the cortex remaining at the poles of the cell makes cytokinesis inherently unstable; an imbalance in cortex contractility between the two poles can compromise the accurate positioning of the constriction ring and result in contractile oscillations. A theoretical model based on a competition between cortex turnover and contraction dynamics accurately accounts for the oscillations. Taken together, our findings reveal an inherent instability in the shape of the dividing cell, indicating that polar cortex contractility must be tightly controlled during cytokinesis. When this control fails, the cortex displays oscillatory instabilities. We are now exploring how cell mechanics are regulated during cell division in order to ensure stable and symmetric cleavage. Furthermore, we started investigating whether contractile oscillations displayed by the apical cortex during epithelial tissue morphogenesis are driven by a similar mechanism. We also study cell shape mechanics during migration, with a particular focus on the formation and function of blebs, cellular protrusions driven by cortex contractions. Blebs are a common alternative to lamellipodia during migration in 3-dimensional environments. We are investigating the specific contributions of blebs and lamellipodia to cell motility in culture cells and in vivo, during zebrafish gastrulation. Furthermore, we are exploring the physical mechanisms of cell translocation during bleb-based migration, which seems to occur without specific adhesions to the substrate. To this aim, we use microfluidics channels, which present a well-defined geometry, allowing for quantitative measurements of cell shape and cortex dynamics during migration. Finally, we are investigating how cortical physical properties are controlled at the network level. As the cortex is less than 300 nm thick, close to the resolution limit of a standard optical microscope, the spatial organisation of cortical components has been elusive. We have developed methods to probe cortex organisation using sub-resolution image analysis. We are investigating the thickness of the cortex and the localisation of essential components, such as myosin motors. Our long-term aim is to understand how cortical contractility is controlled at the molecular level, in healthy and pathological conditions.
Organisations
- University College London (Lead Research Organisation)
- Francis Crick Institute (Collaboration)
- National Center for Scientific Research (Centre National de la Recherche Scientifique CNRS) (Collaboration)
- University College London (Collaboration)
- University of Zurich (Collaboration)
- University of Montreal (Collaboration)
- IMPERIAL COLLEGE LONDON (Collaboration)
- UNIVERSITY OF CAMBRIDGE (Collaboration)
People |
ORCID iD |
Publications
Bergert M
(2015)
Force transmission during adhesion-independent migration.
in Nature cell biology
Berthoumieux H
(2014)
Active elastic thin shell theory for cellular deformations
in New Journal of Physics
Biro M
(2013)
Cell cortex composition and homeostasis resolved by integrating proteomics and quantitative imaging.
in Cytoskeleton (Hoboken, N.J.)
Bodor D
(2020)
Of Cell Shapes and Motion: The Physical Basis of Animal Cell Migration
in Developmental Cell
Bovellan M
(2014)
Cellular control of cortical actin nucleation.
in Current biology : CB
Cao L
(2020)
SPIN90 associates with mDia1 and the Arp2/3 complex to regulate cortical actin organization.
in Nature cell biology
Chaigne A
(2021)
Three-dimensional geometry controls division symmetry in stem cell colonies
in Journal of Cell Science
Chaigne A
(2020)
Abscission Couples Cell Division to Embryonic Stem Cell Fate.
in Developmental cell
Related Projects
Project Reference | Relationship | Related To | Start | End | Award Value |
---|---|---|---|---|---|
MC_UU_12018/1 | 31/07/2013 | 30/03/2017 | £1,079,000 | ||
MC_UU_12018/2 | Transfer | MC_UU_12018/1 | 31/07/2013 | 30/03/2017 | £989,000 |
MC_UU_12018/3 | Transfer | MC_UU_12018/2 | 31/07/2013 | 30/03/2017 | £925,000 |
MC_UU_12018/4 | Transfer | MC_UU_12018/3 | 31/07/2013 | 30/03/2017 | £908,000 |
MC_UU_12018/5 | Transfer | MC_UU_12018/4 | 31/07/2013 | 30/03/2017 | £1,560,000 |
MC_UU_12018/6 | Transfer | MC_UU_12018/5 | 31/07/2013 | 30/03/2017 | £1,234,000 |
MC_UU_12018/7 | Transfer | MC_UU_12018/6 | 31/07/2013 | 30/03/2017 | £1,070,000 |
Description | EU Innovative Training Network |
Amount | £181,221 (GBP) |
Funding ID | 641639 ITN BIOPOL |
Organisation | Marie Sklodowska-Curie Actions |
Sector | Charity/Non Profit |
Country | Global |
Start | 01/2015 |
End | 12/2018 |
Description | European Research Council starting grant |
Amount | € 1,500,000 (EUR) |
Funding ID | 311637 |
Organisation | European Research Council (ERC) |
Sector | Public |
Country | Belgium |
Start | 03/2013 |
End | 02/2018 |
Description | HFSP Young Investigator Grant |
Amount | $400,000 (USD) |
Funding ID | RGY0066/2013 |
Organisation | Human Frontier Science Program (HFSP) |
Sector | Charity/Non Profit |
Country | France |
Start | 09/2013 |
End | 09/2016 |
Description | Philip Leverhulme Prize in Biological Sciences |
Amount | £100,000 (GBP) |
Organisation | The Leverhulme Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 11/2015 |
End | 10/2019 |
Description | Sir Henry Wellcome Postdoctoral Fellowship - Agathe Chaigne |
Amount | £250,000 (GBP) |
Funding ID | 201334/Z/16/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 08/2016 |
End | 08/2020 |
Description | Sir Henry Wellcome Postdoctoral Fellowship - Dani Bodor |
Amount | £250,000 (GBP) |
Funding ID | 204747/Z/16/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 02/2017 |
End | 01/2021 |
Title | 3D cell segmentation software |
Description | ImageJ plugin for the segmentation and morphometric analysis of cell shape and volume in 3 dimensions. |
Type Of Material | Data analysis technique |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | The software is publicly available and is already used by other research groups. |
URL | http://www.ucl.ac.uk/lmcb/meshplugin-0 |
Title | Cortex dynamics simulation |
Description | Agent based simulation for exploring the mechanisms of contractile tension generation in an actomyosin cortex. |
Type Of Material | Computer model/algorithm |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | We used this simulation to explore the mechanisms underlying cortex tension generation in the following paper: Actin cortex architecture regulates cell surface tension. Chugh P, Clark AG, Smith MB, Cassani DAD, Dierkes K, Ragab A, Roux PP, Charras G, Salbreux G, Paluch EK. Nat Cell Biol. 2017. |
URL | https://github.com/PaluchLabUCL/CortexDynamicsNCB |
Title | Cortex thickness analysis (dual colour confocal method) |
Description | Software for cell segmentation and extraction of cortical linescans for the measurement of cortical thickness. |
Type Of Material | Data analysis technique |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | The software its publicly available and has already been used by other groups. In our lab it has been used in two publications: Clark et al, Biophys J 2013 and Chugh et al, Nat Cell Biology 2017 |
URL | https://github.com/PaluchLabUCL/CortexThicknessAnalysis |
Title | Meshplugin |
Description | ImageJ plugin to monitor daughter cell size in 3 dimensions during cytokinesis. |
Type Of Material | Data analysis technique |
Year Produced | 2016 |
Provided To Others? | Yes |
Impact | The plugin was described in a methods paper: Smith MB, Chaigne A, Paluch EK. (2017) An active contour ImageJ plugin to monitor daughter cell size in 3D during cytokinesis. Methods Cell Biol, 137: 323-340 and is freely available online. It has now been used by several other groups in the UK and overseas. |
URL | http://www.ucl.ac.uk/lmcb/meshplugin |
Description | ES cells |
Organisation | University of Cambridge |
Department | Cambridge Stem Cell Institute |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have started a collaboration with the groups of Dr Kevin Chalut and Dr Jenny Nichols to investigate the mechanics of the actin cortex in mouse embryonic stem cells. My lab provides their expertise in actin cortex mechanics and in cell migration. |
Collaborator Contribution | The group of Dr Chalut provides expertise in stem cell biology and biomechanics. The group of Dr. Nichols provides expertise in mouse embryology. |
Impact | four common projects are currently ongoing The collaboration is interdisciplinary, combining cell and developmental biology, embryology, and biophysics. |
Start Year | 2014 |
Description | ES cells |
Organisation | University of Cambridge |
Department | Department of Physiology, Development and Neuroscience |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have started a collaboration with the groups of Dr Kevin Chalut and Dr Jenny Nichols to investigate the mechanics of the actin cortex in mouse embryonic stem cells. My lab provides their expertise in actin cortex mechanics and in cell migration. |
Collaborator Contribution | The group of Dr Chalut provides expertise in stem cell biology and biomechanics. The group of Dr. Nichols provides expertise in mouse embryology. |
Impact | four common projects are currently ongoing The collaboration is interdisciplinary, combining cell and developmental biology, embryology, and biophysics. |
Start Year | 2014 |
Description | Electron microscopy |
Organisation | University College London |
Department | MRC Laboratory for Molecular Cell Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We collaborate with the facility led by Jemima Burden to develop new transmission microscopy imaging techniques to observe the actin cortex. My group provides expertise in actin cell biology |
Collaborator Contribution | Jemima Burden provides expertise in electron microscopy |
Impact | several projects ongoing on imaging the actin cortex and the cortex interactions with intracellular components. |
Start Year | 2014 |
Description | HFSP collaboration |
Organisation | National Center for Scientific Research (Centre National de la Recherche Scientifique CNRS) |
Department | UPR 3082 |
Country | France |
Sector | Academic/University |
PI Contribution | I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling. |
Collaborator Contribution | The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin. |
Impact | Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681 |
Start Year | 2008 |
Description | HFSP collaboration |
Organisation | University College London |
Department | London Centre for Nanotechnology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling. |
Collaborator Contribution | The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin. |
Impact | Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681 |
Start Year | 2008 |
Description | HFSP collaboration |
Organisation | University of Montreal |
Department | Institute of Research in Immunology and Cancer (IRIC) |
Country | Canada |
Sector | Academic/University |
PI Contribution | I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling. |
Collaborator Contribution | The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin. |
Impact | Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681 |
Start Year | 2008 |
Description | Mao group |
Organisation | University College London |
Department | MRC Laboratory for Molecular Cell Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I co-supervise two PhD students with Dr. Yanlan Mao. I provide expertise in biophysics and the cell biology of the actin cytoskeleton. |
Collaborator Contribution | Dr. Mao and her team provide expertise in Drosophila morphogenesis. |
Impact | Two PhD projects are currently ongoing. A joint paper is about to be submitted for publication. |
Start Year | 2015 |
Description | Primordial germ cell migration |
Organisation | Imperial College London |
Department | MRC London Institute of Medical Sciences |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have started a collaboration with Dr. Harry Leitch at the MRC LMS to investigate the mechanisms underlying migration of mouse primordial germ cells. Dr. Irene Aspalter, an MRC-funded postdoc in my group, has generated preliminary data demonstrating that the migration of mammalian PGCs and PGC-like cells derived from stem cells, can be investigated in vitro using micro fabricated devices mimicking in vivo confinement. Based on these data, we have written a grant proposal to extensively investigate PGC migration in vivo and in vitro. |
Collaborator Contribution | Dr Leitch's group works on mouse and human primordial germ cells and the in vivo aspects of the project are investigated in his group. His group also provides cells and expertise for the in vitro investigations. |
Impact | the collaboration is highly multidisciplinary at the interface of cell and developmental biology, biophysics and micro fabrication engineering. Output: joint grant application |
Start Year | 2018 |
Description | Salbreux group |
Organisation | Francis Crick Institute |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Dr Salbreux is a theoretical physicist working in the field of biological physics. We have several ongoing projects combining experiments, quantitative imaging and modelling. The experimental side is provided by my research group. |
Collaborator Contribution | The group of Dr Salbreux provides their expertise in theoretical physics and modelling of biological systems. |
Impact | Common articles since 2013: PMIDS: 23452600; 24845681; 25774834; 27589901 Several articles are currently submitted / being prepared. |
Start Year | 2006 |
Description | Super-resolution |
Organisation | University College London |
Department | MRC Laboratory for Molecular Cell Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I co-supervise a student with Dr. Ricardo Henriques to investigate the nanoscale organisation of the cellular actin cortex. My lab provides the biological question and expertise in cell morphogenesis and the function of the actin cortex. |
Collaborator Contribution | Dr. Henriques provides expertise in state-of-the-art super resolution microscopy. |
Impact | Multi-disciplinary collaboration combining biology, physics and advanced imaging and image analysis. |
Start Year | 2017 |
Description | cryo electron miscroscopy |
Organisation | University of Zurich |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | We collaborate with the group of Prof. Medalia to investigate actin cortex organisation using cryo-electron microscopy. We provide expertise in actin cell biology and a PhD student in my group is lead on this project. |
Collaborator Contribution | The group of Prof. Medalia provides expertise in cryo electron microscopy. |
Impact | The PhD student working on the project successfully defended his PhD in 2018. A joint paper is about to be submitted for publication. |
Start Year | 2016 |
Title | Cortex thickness analysis (dual colour confocal method) |
Description | Software for cell segmentation and extraction of cortical linescans for the measurement of cortical thickness. |
Type Of Technology | Software |
Year Produced | 2013 |
Impact | The software its publicly available and has already been used by other groups. In our lab it has been used in two publications: Clark et al, Biophys J 2013 and Chugh et al, Nat Cell Biology 2017 |
Title | Meshplugin |
Description | ImageJ plugin to monitor daughter cell size in 3 dimensions during cytokinesis. |
Type Of Technology | Software |
Year Produced | 2016 |
Open Source License? | Yes |
Impact | The plugin was described in a methods paper: Smith MB, Chaigne A, Paluch EK. (2017) An active contour ImageJ plugin to monitor daughter cell size in 3D during cytokinesis. Methods Cell Biol, 137: 323-340 and is freely available online. It has now been used by several other groups in the UK and overseas. |
URL | http://www.ucl.ac.uk/lmcb/meshplugin |
Description | MRC Centenary Open Day at UCL |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | activities aiming at explaining cell mechanics to a broader audience. Activities with soap bubbles to mimic cell tension and play-doh model of the cell for children. enthusiastic feedback from the public on the open day |
Year(s) Of Engagement Activity | 2013 |
Description | Nature interview about Physics in Biomedical Research |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interview conducted by a journalist from Nature about physical approaches in biomedical research, particularly in the context of interdisciplinary approaches at the Francis Crick Institute. |
Year(s) Of Engagement Activity | 2014 |
URL | http://www.nature.com/news/biomedical-institute-opens-its-doors-to-physicists-1.15299 |
Description | Times Higher Education interview about the Crick Institute and Biological Physics |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interview conducted by a journalist from Times Higher Education for an article on the Francis Crick Institute, focusing particularly on interdisciplinary approaches to biomedical research. |
Year(s) Of Engagement Activity | 2015 |
URL | https://www.timeshighereducation.com/features/the-francis-crick-institute-science-and-serendipity |
Description | Women in STEM school event |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | 270 pupils aged 14 to 18 attended the Women in STEM event organised by the Camden Council and the Francis Crick Institute. The event consisted of a one hour panel discussion where I was one of the 4 panel members, followed by an open discussion / career fair where a number of students came up to ask further questions to the panelists. |
Year(s) Of Engagement Activity | 2016 |